Publications

Edited Books

  1. Manolis Christodoulakis and Costas S. Iliopoulos, editors. Advances in Combinatorial Algorithms II. Special Issue of Mathematics in Computer Science. Vol. 3, No. 4, Special Issue of Mathematics in Computer Science. 2010.

Book Chapters

  1. Manolis Christodoulakis, Avgis Hadjipapas, Eleftherios S. Papathanasiou, Maria Anastasiadou, Savvas S. Papacostas, and Georgios D. Mitsis. Modern Electroencephalographic Assessment Techniques: Theory and Applications, volume 91 of Neuromethods series, chapter 4: On the effect of volume conduction on graph theoretic measures of brain networks in epilepsy, pages 103-130. Humana Press, 2015.
  2. Manolis Christodoulakis and Michalis Christou. Abelian concepts in strings: a review. In Jan Holub, Bruce W. Watson, and Jan Zdárek, editors, Festschrift for Bořivoj Melichar, Prague Stringology Conference. August 2012.
  3. Manolis Christodoulakis and Costas S. Iliopoulos. Recent advances in weighted DNA sequences. In Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications. (eds M. Elloumi and A. Y. Zomaya), John Wiley & Sons, Inc., Hoboken, NJ, USA, 2010.
  4. Michal Vorá cek, Bořivoj Melichar, and Manolis Christodoulakis. Generalized and weighted strings: Repetitions and pattern matching. In Costas S. Iliopoulos and Thierry Lecroq, editors, String Algorithmics, volume 2: Texts in Algorithms of NATO Book series, pages 225248. Kings College London Publications, 2004.

Journal Publications

  1. Manolis Christodoulakis, Michalis Christou, Maxime Crochemore, and Costas S. Iliopoulos. Abelian borders in binary words. Discrete Applied Mathematics, 171:141-146, July 2014.
  2. Manolis Christodoulakis, Michalis Christou, Maxime Crochemore, and Costas S. Iliopoulos. On the average number of regularities in a word. Theoretical Computer Science, 525:3-9, March 2014. ISSN 0304-3975.
  3. Manolis Christodoulakis, Michalis Christou, Maxime Crochemore, and Costas S. Iliopoulos. Abelian borders in words. Fundamenta Informaticae, 2013 (accepted).
  4. Manolis Christodoulakis, Michalis Christou, Maxime Crochemore, and Costas S. Iliopoulos. On the appearance of seeds in words. Journal of Combinatorial Mathematics and Combinatorial Computing, 2013 (accepted).
  5. Manolis Christodoulakis, Michalis Christou, Maxime Crochemore, and Costas S. Iliopoulos. Overlapping factors in words. Australasian Journal of Combinatorics, 57:49-64, 2013.
  6. Manolis Christodoulakis, P. J. Ryan, W. F. Smyth, and Shu Wang. Indeterminate strings, prefix arrays & undirected graphs. Submitted for publication, 2012.
  7. Manolis Christodoulakis and Gerhard Brey. Edit distance with combinations and splits and its applications in OCR name matching. International Journal of Foundations of Computer Science, 20(6):1047-1068, 2009.
  8. Alexander E. Smith, Constantinos Chronis, Manolis Christodoulakis, Stephen J. Orr, Nicholas C. Lea, Natalie A. Twine, Akshay Bhinge, Ghulam J. Mufti, and N. Shaun B. Thomas. Epigenetics of human T cells during the G 0 → G 1 transition. Genome Research, 19(8):1325-37, August 2009.
  9. Manolis Christodoulakis, Costas S. Iliopoulos, M. Sohel Rahman, and William F. Smyth. Identifying rhythms in musical texts. International Journal of Foundations of Computer Science, 19(1):37-52, 2008.
  10. Yoan José Pinzón Ardila, Manolis Christodoulakis, Costas S. Iliopoulos, and Manal Mohamed. Efficient (δ,γ)-pattern-matching with don't cares. Journal of Combinatorial Mathematics and Combinatorial Computing, ISSN 0835-3026, 2007.
  11. Manolis Christodoulakis, G. Brian Golding, Costas S. Iliopoulos, Yoan José Pinzón Ardila, and W. F. Smyth. Efficient algorithms for counting and reporting segregating sites in genomic sequences. Journal of Computational Biology, 14(7):1001-1010, 2007.
  12. Manolis Christodoulakis, Costas S. Iliopoulos, and Yoan José Pinzón Ardila. Simple algorithm for sorting the Fibonacci string rotations. International Journal of Pure and Applied Mathematics, 31(1):97-108, 2007.
  13. Manolis Christodoulakis, Costas S. Iliopoulos, Laurent Mouchard, Katerina Perdikuri, Athanasios Tsakalidis, and Kostas Tsichlas. Computation of repetitions and regularities on biological weighted sequences. Journal of Computational Biology, 13(6):1214-1231, 2006.
  14. Manolis Christodoulakis, Costas S. Iliopoulos, Kunsoo Park and Jeong Seop Sim. Approximate Seeds of Strings. Journal of Automata, Languages and Combinatorics, 10(5/6):609-626, 2005.
  15. Manolis Christodoulakis, Costas S. Iliopoulos, Kunsoo Park and Jeong Seop Sim. Implementing approximate regularities. Mathematical and Computer Modelling, 42(7-8):855-866, 2005.

Refereed Conference Proceedings

  1. Maria Anastasiadou, Avgis Hadjipapas, Manolis Christodoulakis, Eleftherios S. Papathanasiou, Savvas S. Papacostas, and Georgios D. Mitsis. Detection and removal of muscle artifacts from scalp EEG recordings in patients with epilepsy. In Proceedings of the 14th IEEE International Conference on Bioinformatics & Bioengineering (BIBE). Boca Raton, USA, November 2014.
  2. Manolis Christodoulakis, Avgis Hadjipapas, Eleftherios S. Papathanasiou, Maria Anastasiadou, Savvas S. Papacostas, and Georgios D. Mitsis. Periodicity in functional brain networks: Application to scalp EEG from epilepsy patients. In 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), pages 2805-8. August 2014.
  3. Manolis Christodoulakis, Avgis Hadjipapas, Eleftherios S. Papathanasiou, Maria Anastasiadou, Savvas S. Papacostas, and Georgios D. Mitsis. Graph-theoretic analysis of scalp EEG brain networks in epilepsy - the influence of montage and volume conduction. In Proceedings of the 13th IEEE International Conference on Bioinformatics & Bioengineering (BIBE), pages 1-4. Chania, November 2013. doi:10.1109/BIBE.2013.6701572
  4. Manolis Christodoulakis, Maria Anastasiadou, Savvas S. Papacostas, Eleftherios S. Papathanasiou, and Georgios D. Mitsis. Investigation of network brain dynamics from EEG measurements in patients with epilepsy using graph-theoretic approaches. In Proceedings of the 12th IEEE International Conference on BioInformatics and BioEngineering (BIBE). November 2012.
  5. Manolis Christodoulakis, Gerhard Brey and Rizwan Ahmed Uppal. Evaluation Of Approximate Pattern Matching Algorithms For OCR Texts. In Proceedings of the 4th Advances in Computing and Technology Conference (AC&T), pages 35-42. University of East London, January 2009.
  6. Manolis Christodoulakis and Gerhard Brey. Edit Distance with Single-Symbol Combinations and Splits. In Jan Holub and Jan Zdárek, editors, Proceedings of the Prague Stringology Conference, pages 208-217. Czech Technical University, September 2008.
  7. Manolis Christodoulakis, Costas S. Iliopoulos and Yoan José Pinzón Ardila. Simple algorithm for sorting the Fibonacci string rotations. In Jirí Wiedermann, Gerard Tel, Jaroslav Pokorný, Mária Bieliková, and Julius Stuller, editors, Proceedings of the 32nd International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM), volume 3831 of Lecture Notes in Computer Science, pages 218-225. Springer, Merín, Czech Republic, January 2006.
  8. Manolis Christodoulakis, Costas S. Iliopoulos, M. Sohel Rahman, and William F. Smyth. Song classifications for dancing. In Proceedings of the Prague Stringology Conference (PSC), pages 41-48. Prague, Czech Republic, August 2006.
  9. Raphaël Clifford, Manolis Christodoulakis, Tim Crawford, David Meredith, and Geraint Wiggins. A fast, randomised, maximal subset matching algorithm for document-level music retrieval. In Proceedings of the 7th International Conference on Music Information Retrieval (ISMIR), pages 150-155. Victoria, Canada, October 2006.
  10. Yoan José Pinzón Ardila, Manolis Christodoulakis, Costas S. Iliopoulos and Manal Mohamed. Efficient (δ,γ)-Pattern-Matching with Don't Cares. In J. Ryan, P. Manyem, K. Sugeng, and M. Miller, editors, Proceedings of the 16th Australasian Workshop on Combinatorial Algorithms (AWOCA), pages 27-38. Ballarat, Australia, September 2005.
  11. Fatima Arikat, Aris Bakalis, Manolis Christodoulakis, Costas S. Iliopoulos and Laurent Mouchard. Experimental Results in Pattern Matching on Weighted Sequences. In Proceedings of the International Conference on Numerical Analysis and Applied Mathematics (ICNAAM). 2005.
  12. Manolis Christodoulakis, Costas S. Iliopoulos, Laurent Mouchard and Kostas Tsichlas. Pattern matching on weighted sequences. In Katia S. Guimarães and Marie-France Sagot, editors, Proceedings of the Algorithms and Computational Methods for Biochemical and Evolutionary Networks (CompBioNets), pages 17-30. 2004.
  13. Manolis Christodoulakis, Costas S. Iliopoulos, Kostas Tsichlas and Katerina Perdikuri. Searching for regularities in weighted sequences. In Theodore Simos and George Maroulis, editors, Proceedings of the International Conference of Computational Methods in Sciences and Engineering (ICCMSE), pages 701-704. 2004. ISBN 90-6764-418-8.
  14. Manolis Christodoulakis, Costas S. Iliopoulos, Kunsoo Park and Jeong Seop Sim. Approximate Seeds of Strings. In Milan Simánek, editor, Proceedings of the Prague Stringology Conference (PSC), pages 25-36. September 2003.
  15. Manolis Christodoulakis, Costas S. Iliopoulos, Kunsoo Park and Jeong Seop Sim. Implementing Approximate Regularities. In Theodore Simos, editor, Proceedings of the International Conference of Computational Methods in Sciences and Engineering (ICCMSE), pages 160-165. World Scientific Publishing, Kastoria, Greece, September 2003. ISBN 981-238-595-9.

Workshops & Conferences without Proceedings

  1. Maria Anastasiadou, Avgis Hadjipapas, Manolis Christodoulakis, Eleftherios S. Papathanasiou, Savvas S. Papacostas, and Georgios D. Mitsis. Automatic detection and removal of muscle artifacts from scalp eeg recordings in patients with epilepsy. In 4th KIOS Workshop (poster). University of Cyprus, Nicosia, Cyprus, June 2014.
  2. Manolis Christodoulakis, Eleftherios S. Papathanasiou, Avgis Hadjipapas, Maria Anastasiadou, Savvas S. Papacostas, and Georgios D. Mitsis. Longduration properties of functional brain networks in patients with epilepsy. In 4th KIOS Workshop (poster). University of Cyprus, Nicosia, Cyprus, June 2014.
  3. Manolis Christodoulakis, Eleftherios S. Papathanasiou, Avgis Hadjipapas, Maria Anastasiadou, Savvas S. Papacostas, and Georgios D. Mitsis. Longduration properties of functional brain networks in patients with epilepsy. In Organization for Human Brain Mapping (OHBM), (poster). Hamburg, Germany, June 2014.
  4. Manolis Christodoulakis, Avgis Hadjipapas, Eleftherios S. Papathanasiou, Maria Anastasiadou, Savvas S. Papacostas, and Georgios D. Mitsis. On the effect of volume conduction on graph theoretic measures of brain networks in epilepsy. In 3rd KIOS Workshop (poster). Nicosia, Cyprus, June 2013.
  5. Manolis Christodoulakis, Eleftherios S. Papathanasiou, Avgis Hadjipapas, Maria Anastasiadou, Savvas S. Papacostas, and Georgios D. Mitsis. Patterns of brain connectivity in epileptic patients. In 30th International Epilepsy Congress (poster). Montreal, Canada, June 2013.
  6. Manolis Christodoulakis, Maria Anastasiadou, Eleftherios Papathanasiou, Savvas Papacostas, and Georgios Mitsis. Investigation of brain dynamics from EEG measurements in patients with epilepsy using graph-theoretic approaches. In 2nd KIOS Workshop (poster). 2012.
  7. Manolis Christodoulakis, S. M. Shabab Hossain, Md. Mahmudur Rahman, and M. Sohel Rahman. Comparing weighted sequences using longest common subsequences. In Proceedings of the 4th conference of the Hellenic Society for Computational Biology and Bioinformatics (HSCBB), 2009.
  8. Manolis Christodoulakis and Gerhard Brey. How to find Mrs. Billington? Approximate string matching applied to misspelled names. In Proceedings of the Digital Humanities Conference, 2008.
  9. Yoan José Pinzón Ardila, Manolis Christodoulakis and Manal Mohamed. Wildcards in δ-Matching. In Proceedings of the Franco-Canadian Workshop on Combinatorial Algorithms (COMAL). 2005. Abstract.
  10. Manolis Christodoulakis and Costas S. Iliopoulos. Lexicographically Sorting Fibonacci Rotations. In Proceedings of the Franco-Canadian Workshop on Combinatorial Algorithms (COMAL). 2005. Abstract.
  11. Manolis Christodoulakis, Costas S. Iliopoulos, and William F. Smyth. Rhythm discovery in musical sequences. In Proceedings of the Digital Music Research Network Workshop and Roadmap Launch. 2005. Poster.

Thesis

  1. Manolis Christodoulakis. Regularities on Fixed and Weighted Sequences. PhD thesis, Department of Computer Science, King's College London, October 2005.
  2. Manolis Christodoulakis. Research on the Current Speech Recognition Technologies. Masters thesis, Computer Engineering and Informatics Department, University of Patras, September 2001.

Research Interests

Recent Participation in Research Grants